The dataset on testate amoebae (Amphitremida; Arcellinida; Euglyphida) in Sphagnum bogs from Eastern Fennoscandia (Northern Karelia)

Occurrence
Latest version published by Penza State University on May 20, 2024 Penza State University
Publication date:
20 May 2024
Published by:
Penza State University
License:
CC-BY 4.0

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 3,064 records in English (79 KB) - Update frequency: unknown
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Metadata as an RTF file download in English (23 KB)

Description

The dataset consists of 3064 occurrence entries of testate amoebae taxa, obtained from 236 surface moss samples, collected in 11 Sphagnum bogs from Eastern Fennoscandia (Northern Karelia; Karelia Republic and Murmansk district, Russia). Sample collecting was carried out by Yuri Mazei, either directly or under his supervising, in 2004–2022 years. Each sample series is designated as a single “parent event” and represents a set of samples (“sample events”), collected at one day at a single bog. In the case a bog was sampled several times, navigation across the dataset can be done using bog designations (“location IDs”) and sample dates (“event dates”). For each bog, a unique couple of geographical coordinates is reported, therefore the geographical coordinates represent bog locations across the dataset. Most sample series were described in publications (Mazei et al., 2009a, 2009b, 2010, 2011; Mazei and Bubnova, 2009; Mazei and Kabanov, 2008; Malysheva and Mazei, 2013).

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 3,064 records.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Ivanovskii A A, Babeshko K V, Chernyshov V A, Esaulov A S, Komarov A A, Mazei N G, Meskhadze D L, Saldaev D A, Tsyganov A N, Bubnova O A, Kabanov A N, Mazei Y A (2024). The dataset on testate amoebae (Amphitremida; Arcellinida; Euglyphida) in Sphagnum bogs from Eastern Fennoscandia (Northern Karelia). Version 1.6. Penza State University. Occurrence dataset. http://gbif.ru:8080/ipt/resource?r=karelia2023&v=1.6

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is Penza State University. This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 5e3e9a4c-beae-425c-9b91-f89807a12704.  Penza State University publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Participant Node Managers Committee.

Keywords

Occurrence

Contacts

Aleksandr A Ivanovskii
  • Originator
  • Associate professor
Lomonosov Moscow State University
RU
Kirill V Babeshko
  • Originator
  • Associate professor
Lomonosov Moscow State University
RU
Viktor A Chernyshov
  • Originator
  • Associate professor
Penza State University
RU
Anton S Esaulov
  • Originator
  • Point Of Contact
  • Associate professor
Shenzhen MSU-BIT University
  • No. 1, International University Park Road
518172 Shenzhen
CN
  • 15994709513
A. A. Komarov
  • Originator
  • Associate professor
Penza State University
RU
N. G. Mazei
  • Originator
  • Senior Researcher
Lomonosov Moscow State University
D. L. Meskhadze
  • Originator
  • Bachelor student
Shenzhen MSU-BIT University
CN
Damir A Saldaev
  • Originator
  • Professor
Lomonosov Moscow State University
RU
A. N. Tsyganov
  • Originator
  • Leading Researcher
Lomonosov Moscow State University
Moscow
RU
O. A. Bubnova
  • Originator
  • Associate professor
Penza State University
RU
A. N. Kabanov
  • Originator
  • Staff member
Penza State University
RU
Y. A. Mazei
  • Metadata Provider
  • Originator
  • Professor
Lomonosov Moscow State University
RU
Anton Esaulov

Geographic Coverage

Eastern Fennoscandia, 11 bogs in the vicinity of Kandalaksha Bay shore, White Sea.

Bounding Coordinates South West [66.522, 32.55], North East [67.529, 33.455]

Taxonomic Coverage

N/A

Kingdom Protozoa, Chromista
Class Imbricatea, Tubulinea, Labyrinthulomycetes
Family Netzeliidae, Assulinidae, Euglyphidae, Arcellidae, Centropyxidae, Trinematidae, Difflugiidae, Hyalospheniidae, Cyphoderiidae, Amphitremidae, Incertae sedis

Temporal Coverage

Start Date / End Date 2004-06-01 / 2004-08-31
Start Date 2007-07-30
Start Date / End Date 2009-06-01 / 2009-08-31
Start Date / End Date 2017-06-21 / 2017-06-25
Start Date 2022-06-12

Sampling Methods

At each bog, sample points of a sample series encompassed a complete microtopographical gradient (moss hummocks, even moss plots, pools) or represented a gradient “open bog – forest”.

Study Extent 11 Sphagnum bogs from Eastern Fennoscandia (Northern Karelia; Karelia Republic and Murmansk district, Russia). Totally 236 samples of surface moss substrate from 17 sample series (referred as “parent event IDs” in the dataset). Each sample series is a set of samples (“sample events”), collected at one day at a single bog.

Method step description:

  1. Sample collection and laboratory sample preparation were carried out by standard methods (Hendon and Charman, 1997; Mazei et al., 2011; Tsyganov et al., 2012). To make data consistent across the dataset, taxa abundancies are reported as percentage relative abundancies of shell numbers.

Bibliographic Citations

  1. González-Miguéns R., Todorov M., Blandenier Q., Duckert C., Porfirio-Sousa A.L., Ribeiro G.M., Ramos D., Lahr D.J.G., Buckley D., Lara E. Deconstructing Difflugia: The tangled evolution of lobose testate amoebae shells (Amoebozoa: Arcellinida) illustrates the importance of convergent evolution in protist phylogeny // Molecular Phylogenetics and Evolution. 2022. Vol. 175. P. 107557. DOI: 10.1016/j.ympev.2022.107557
  2. Hendon D., Charman D.J. The preparation of testate amoebae (Protozoa: Rhizopoda) samples from peat // The Holocene. 1997. Vol. 7, № 2. P. 199–205. DOI: 10.1177/095968369700700207
  3. Kosakyan A., Gomaa F., Lara E., Lahr D.J.G. Current and future perspectives on the systematics, taxonomy and nomenclature of testate amoebae // European Journal of Protistology. 2016. Vol. 55. P. 105–117. DOI: 10.1016/j.ejop.2016.02.001
  4. Malysheva Ye.A., Mazei Yu.A. Struktura soobshchestva rakovinnykh ameb v kontaktnoy zone “les – sfagnovoye boloto” na severe Karelii // XXI vek: itogi proshlogo i problemy nastoyashchego Plyus. 2013. V. 2, iss. 9 (13). P. 35–41. (in Russian) [Малышева Е.А., Мазей Ю.А. Структура сообщества раковинных амеб в контактной зоне “лес – сфагновое болото” на севере Карелии // XXI век: итоги прошлого и проблемы настоящего Плюс. 2013. Т. 2, № 9 (13). C. 35–41.]
  5. Mazei Yu.A., Blinokhvatova Yu.V., Embulaeva E.A. Specific features of the microspatial distribution of soil testate amoebae in the forests of the Middle Volga region // Arid Ecosystems. 2011. Vol. 1, iss. 1. P. 46–52. DOI: 10.1134/S2079096111010069
  6. Mazei Yu.A., Bubnova O.A. Vidovoy sostav i struktura soobshchestva rakovinnykh ameb v severotayezhnom sosnovo-sfagnovom bolote (Kareliya, Rossiya) // Byulletenʹ Moskovskogo obshchestva ispytateley prirody. Otdel biologicheskiy. 2009. V. 114, iss. 6. P. 15–23. (in Russian) [Мазей Ю.А., Бубнова О.А. Видовой состав и структура сообщества раковинных амеб в северотаежном сосново-сфагновом болоте (Карелия, Россия) // Бюллетень Московского общества испытателей природы. Отдел биологический. 2009. Т. 114, № 6. С. 15–23.]
  7. Mazei Yu.A., Bubnova O.A., Chernyshov V.A. Struktura soobshchestva rakovinnykh amëb v sfagnovoy splavine severotayezhnogo bolota (Kareliya, Rossiya) // Povolzhskiy ekologicheskiy zhurnal. 2009. Iss. 2. P. 115–124. (in Russian) [Мазей Ю.А., Бубнова О.А., Чернышов В.А. Структура сообщества раковинных амёб в сфагновой сплавине северотаежного болота (Карелия, Россия) // Поволжский экологический журнал. 2009. № 2. С. 115–124.]
  8. Mazei Yu.A., Bubnova O.A., Tsyganov A.N., Chernyshov V.A. Struktura soobshchestva rakovinnykh ameb v gryadovo-ozerkovom bolotnom komplekse severnoy taygi (Kareliya, Rossiya) // Izvestiya Samarskogo nauchnogo tsentra Rossiyskoy akademii nauk. 2010. V. 12, iss 1. P. 99–102. (in Russian) [Мазей Ю.А., Бубнова О.А., Цыганов А.Н., Чернышов В.А. Структура сообщества раковинных амеб в грядово-озерковом болотном комплексе северной тайги (Карелия, Россия) // Известия Самарского научного центра Российской академии наук. 2010. Т. 12, № 1. С. 99–102.]
  9. Mazei Yu.A., Kabanov A.N. Rakovinnyye ameby v osokovo-sfagnovom zabolochennom lesu na severe Karelii // Izvestiya Penzenskogo gosudarstvennogo pedagogicheskogo universiteta im. V.G. Belinskogo. Ser. Yestestvennyye nauki. 2008. № 10(14). P. 101–104. (in Russian) [Мазей Ю.А., Кабанов А.Н. Раковинные амебы в осоково-сфагновом заболоченном лесу на севере Карелии // Известия Пензенского государственного педагогического университета им. В.Г. Белинского. Сер. Естественные науки. 2008. № 10(14). С. 101–104.]
  10. Mazei Yu.A., Tsyganov A.N., Bubnova O.A. Vidovoy sostav i struktura soobshchestv rakovinnykh ameb v sfagnovom bolote na severe Karelii (Pribelomorskaya nizmennostʹ) // Zoologicheskiy zhurnal. 2009. V. 88, iss. 7. P. 771–782. (in Russian) [Мазей Ю.А., Цыганов А.Н., Бубнова О.А. Видовой состав и структура сообществ раковинных амеб в сфагновом болоте на севере Карелии (Прибеломорская низменность) // Зоологический журнал. 2009. Т. 88, № 7. С. 771–782.]
  11. Mazei, Yu.A.; Tsyganov, A.N. Freshwater Testate Amoebae. Moscow: KMK, 2006. 300 p. ISBN 5-87317-336-2
  12. Ruggiero M.A., Gordon D.P., Orrell T.M., Bailly N., Bourgoin T., Brusca R.C., Cavalier-Smith T., Guiry M.D., Kirk P.M. A Higher Level Classification of All Living Organisms // PLOS ONE. Public Library of Science, 2015. Vol. 10, № 4. P. e0119248. DOI: 10.1371/journal.pone.0119248
  13. Tsyganov A.N., Babeshko K.V., Mazei Yu.A. A Guide to Testate Amoebae with the Keys to Genera. Penza: Penza State University Publ., 2016. 132 p.
  14. Tsyganov A.N., Temmerman S., Ledeganck P., Beyens L. The Distribution of Soil Testate Amoebae under Winter Snow Cover at the Plot-scale Level in Arctic Tundra (Qeqertarsuaq/Disko Island, West Greenland) // Acta Protozoologica. 2012. Vol. 51, № 2. P. 155–167. DOI: 10.4467/16890027AP.12.012.0516

Additional Metadata

Alternative Identifiers 5e3e9a4c-beae-425c-9b91-f89807a12704
http://gbif.ru:8080/ipt/resource?r=karelia2023